shannon: Shannon's Biodiversity Index
In OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Description
Usage
Arguments
Value
Note
Author(s)
Examples
Description
Calculates Shannon's Biodiversity Index on a single column of relative abundance data. This metric takes into account both richness and evenness.
Usage
1
Arguments
sample
A vector of relative abundance data, typically a single column in a matrix
Value
Returns a single number indicating the amount of biodiversity in the tested sample
Note
Use apply functions to calculate Shannon's index for all samples in a matrix
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1
2
OTUtable documentation built on May 1, 2019, 10:51 p.m.
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Description Usage Arguments Value Note Author(s) Examples
Description
Calculates Shannon's Biodiversity Index on a single column of relative abundance data. This metric takes into account both richness and evenness.
Usage
1 |
Arguments
sample |
A vector of relative abundance data, typically a single column in a matrix |
Value
Returns a single number indicating the amount of biodiversity in the tested sample
Note
Use apply functions to calculate Shannon's index for all samples in a matrix
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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