taxonomy: Taxonomic assignments of OTUs
In OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Description
Usage
Format
Details
Author(s)
Description
A dataset containing the taxonomy of each OTU in the otu_table
Produced from mothur output using clean_taxonomy()
Bootstrap values have been removed from this dataset, but are still available in as part of the Data folder in the McMahonLab/North_Temperate_Lakes-Microbial_Observatory GitHub repo
Usage
1
Format
A dataframe with 7 columns (taxonomic levels) and 6,208 rows (OTUs)
Details
Classified using our Freshwater database, followed by Greengenes - for the full workflow, visit the McMahonLab Github 16STax-Ass repository
Some OTUs are missing; these were removed by subsampling of the OTU table
The presence of both blank (__) assignments and "unclassified" assignments are the result of the dual classification.
Author(s)
Alexandra Linz <amlinz16@gmail.com>
OTUtable documentation built on May 1, 2019, 10:51 p.m.
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Description Usage Format Details Author(s)
Description
A dataset containing the taxonomy of each OTU in the otu_table Produced from mothur output using clean_taxonomy() Bootstrap values have been removed from this dataset, but are still available in as part of the Data folder in the McMahonLab/North_Temperate_Lakes-Microbial_Observatory GitHub repo
Usage
1 |
Format
A dataframe with 7 columns (taxonomic levels) and 6,208 rows (OTUs)
Details
Classified using our Freshwater database, followed by Greengenes - for the full workflow, visit the McMahonLab Github 16STax-Ass repository Some OTUs are missing; these were removed by subsampling of the OTU table The presence of both blank (__) assignments and "unclassified" assignments are the result of the dual classification.
Author(s)
Alexandra Linz <amlinz16@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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