olink_norm_input_check_df_cols: Check columns of a list of datasets to be normalized.

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Check columns of a list of datasets to be normalized.

Description

This function takes as input a named list of datasets and checks if their columns allow the normalization to be performed. The input may contain "tibble", "ArrowTable" or a mixture of them.

Usage

olink_norm_input_check_df_cols(lst_df, lst_cols)

Arguments

lst_df	Named list of datasets to be normalized.
lst_cols	Named list of check logs returned by check_npx.

Value

NULL unless there is an error.

Author(s)

Klev Diamanti

Examples

# One dataset
lst_df_v1 <- list(
  "p1" = npx_data1
) |>
  lapply(function(l_df) {
    l_df |>
      dplyr::select(
        -dplyr::any_of(c("Normalization"))
      )
  })

lst_df_v1_check <- lst_df_v1 |>
  lapply(function(.x) {
    check_npx(df = .x) |>
      suppressWarnings() |>
      suppressMessages() |>
      (\(.) .$col_names)()
  })

OlinkAnalyze:::olink_norm_input_check_df_cols(
  lst_df = lst_df_v1,
  lst_cols = lst_df_v1_check
)

# Two datasets
lst_df_v2 <- list(
  "p1" = npx_data1,
  "p2" = npx_data2
) |>
  lapply(function(l_df) {
    l_df |>
      dplyr::select(
        -dplyr::any_of(c("Normalization"))
      )
  })

lst_df_v2_check <- lst_df_v2 |>
  lapply(function(.x) {
    check_npx(df = .x) |>
      suppressWarnings() |>
      suppressMessages() |>
      (\(.) .$col_names)()
  })

OlinkAnalyze:::olink_norm_input_check_df_cols(
  lst_df = lst_df_v2,
  lst_cols = lst_df_v2_check
)

# Multiple datasets
lst_df_v3 <- list(
  "p1" = npx_data1,
  "p2" = npx_data2,
  "p3" = npx_data1,
  "p4" = npx_data2
) |>
  lapply(function(l_df) {
    l_df |>
      dplyr::select(
        -dplyr::any_of(c("Normalization"))
      )
  })

lst_df_v3_check <- lst_df_v3 |>
  lapply(function(.x) {
    check_npx(df = .x) |>
      suppressWarnings() |>
      suppressMessages() |>
      (\(.) .$col_names)()
  })

OlinkAnalyze:::olink_norm_input_check_df_cols(
  lst_df = lst_df_v3,
  lst_cols = lst_df_v3_check
)

OlinkAnalyze documentation built on June 24, 2026, 1:06 a.m.