|Check data completeness
|Example Sample Manifest
|NPX Data in Long format
|NPX Data in Long format, Follow-up
|Function which performs an ANOVA per protein
|Function which performs an ANOVA posthoc test per protein.
|Function which plots boxplots of selected variables
|Bridge selection function
|Olink color scale for discrete ggplots
|Olink color scale for continuous ggplots
|Plot distributions of a given variable for all plates
|Plot all plates colored by a variable
|Function to plot the NPX distribution by panel
|Olink fill scale for discrete ggplots
|Olink fill scale for continuous ggplots
|Function to plot a heatmap of the NPX data
|Function which performs a linear mixed model per protein
|Function which performs a point-range plot per protein on a...
|Function which performs a linear mixed model posthoc per...
|Normalization of all proteins (by OlinkID).
|Bridge normalization of all proteins between two NPX...
|Bridge and/or subset normalization of all proteins among...
|An internal function to perform checks on the input of the...
|An internal function to perform checks on the input project...
|An internal function to perform checks on the input samples...
|Subset normalization of all proteins between two NPX...
|Function which performs a Kruskal-Wallis Test or Friedman...
|Function which performs posthoc test per protein for the...
|Function which A two-way ordinal analysis of variance can...
|Function which performs an posthoc test per protein.
|Olink color panel for plotting
|Performs pathway enrichment using over-representation...
|Creates a heatmap of selected pathways and proteins
|Creates bargraph of top/selected enrichment terms from GSEA...
|Function to plot a PCA of the data
|Randomly assign samples to plates
|Function to plot an overview of a sample cohort per Panel
|Function which performs a t-test per protein
|Function to make a UMAP plot from the data
|Easy volcano plot with Olink theme
|Function which performs a Mann-Whitney U Test per protein
|Capture the output of printing an object
|Read in flex data
|Function to read NPX data into long format
|Helper function to read in Olink Explore csv or txt files
|Helper function to read in Olink Explore parquet output files
|Helper function to read in Olink Explore zip csv files
|Function to set plot theme
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