olink_normalization_sample_check: An internal function to perform checks on the input samples...

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

An internal function to perform checks on the input samples in the functions olink_normalization_bridge and olink_normalization_subset. The function is expected to run all checks on SampleID to make sure that normalization can be performed smoothly. It should work independently of the function calling it.

Description

An internal function to perform checks on the input samples in the functions olink_normalization_bridge and olink_normalization_subset. The function is expected to run all checks on SampleID to make sure that normalization can be performed smoothly. It should work independently of the function calling it.

Usage

olink_normalization_sample_check(
  list_samples,
  check_mode,
  project_1_all_samples,
  project_2_all_samples
)

Arguments

list_samples	Named list of 2 arrays containing SampleID of the subset or bridge samples to be used for normalization. The names of the two arrays should be DF1 and DF2 corresponding to projects 1 and 2, respectively. (required)
check_mode	Flag "bridge" or "subset" indicating the type of normalization the check should be tailored to (required)
project_1_all_samples	Array of all samples from project 1 (required)
project_2_all_samples	Array of all samples from project 2 (required)

Value

a character message. If the message is "TRUE" then all checks passed, otherwise an error message will be printed.

OlinkAnalyze documentation built on April 4, 2025, 3:26 a.m.