olink_displayPlateLayout: Plot all plates colored by a variable

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Plot all plates colored by a variable

Description

Displays each plate in a facet with cells colored by the given variable using ggplot and ggplot2::geom_tile.

Usage

olink_displayPlateLayout(
  data,
  fill.color,
  PlateSize = 96,
  num_ctrl = 8,
  rand_ctrl = FALSE,
  Product,
  include.label = FALSE
)

Arguments

data	tibble/data frame in long format returned from the olink_plate_randomizer function.
fill.color	Column name to be used as coloring variable for wells.
PlateSize	Integer. Either 96 or 48. 96 is default.
num_ctrl	Numeric. Number of controls on each plate (default = 8)
rand_ctrl	Logical. Whether controls are added to be randomized across the plate (default = FALSE)
Product	String. Name of Olink product used to set PlateSize if not provided. Optional.
include.label	Should the variable group be shown in the plot.

Value

An object of class "ggplot" showing each plate in a facet with the cells colored by values in column fill.color in input data.

See Also

• olink_plate_randomizer() for generating a plating scheme

• olink_displayPlateDistributions() for validating that sites are properly randomized

Examples

randomized.manifest <- olink_plate_randomizer(manifest)
olink_displayPlateLayout(data = randomized.manifest, fill.color="Site")

OlinkAnalyze documentation built on Nov. 4, 2023, 1:07 a.m.