Files in OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/olink_ordinal_regression.R
R/sysdata.rda
R/check_character.R
R/olink_normalization_utils.R
R/olink_boxplot.R
R/plot_volcano.R
R/olink_bridge_selector.R
R/olink_pathway_visualization.R
R/plot_heatmap_helper.R
R/olink_qc_plot.R
R/check_numeric.R
R/olink_normalization.R
R/olink_plate_randomizer.R
R/read_npx_utils.R
R/read_npx_excel.R
R/read_npx_parquet.R
R/check_npx.R
R/olink_normalization_format.R
R/olink_pathway_enrichment.R
R/Olink_one_non_parametric.R
R/plot_point_range.R
R/dist_plot.R
R/data.R
R/olink_normalization_n.R
R/olink_wilcox.R
R/plot_umap.R
R/read_npx_format.R
R/olink_theme.R
R/olink_ttest.R
R/check_file.R
R/read_npx.R
R/olink_color.R
R/read_npx_delim.R
R/olink_lod.R
R/olink_normalization_product.R
R/get_others.R
R/read_npx_wide.R
R/olink_pathway_heatmap.R
R/plot_heatmap.R
R/get_olink_platforms.R
R/check_library_installed.R
R/read_npx_legacy.R
R/check_df.R
R/olink_outlier_detection_utils.R
R/globals.R
R/clean_npx.R
R/olink_lmer.R
R/check_integer.R
R/npxProcessing.R
R/pca_plot.R
R/read_npx_zip.R
R/plot_is_bridgeable.R
R/check_list.R
R/olink_anova.R
R/check_columns.R
R/osi_dist_plot.R
R/utils.R
R/check_boolean.R
inst/doc/OlinkAnalyze-Vignette.html
inst/doc/OlinkAnalyze-Vignette.Rmd
inst/doc/OlinkAnalyze-Vignette.R
inst/extdata/npx_data1.xlsx
inst/extdata/npx_data_ext.parquet
inst/extdata/npx_data1_meta.csv
inst/extdata/OlinkID_Reveal_mapping.rds
inst/extdata/OlinkID_Reveal_HT_mapping.rds
inst/extdata/OlinkID_HT_mapping.rds
build/vignette.rds
tests/testthat.R
tests/testthat/helper-check.R
tests/testthat/test-read_npx.R
tests/testthat/test-get_olink_platforms.R
tests/testthat/test-plot_volcano.R
tests/testthat/test-Olink_one_non_parametric.R
tests/testthat/test-check_df.R
tests/testthat/test-read_npx_zip.R
tests/testthat/test-read_npx_excel.R
tests/testthat/test-olink_qc_plot.R
tests/testthat/test-olink_pathway_heatmap.R
tests/testthat/test-olink_normalization_format.R
tests/testthat/test-olink_ttest.R
tests/testthat/test-check_columns.R
tests/testthat/test-utils.R
tests/testthat/test-check_boolean.R
tests/testthat/test-check_npx.R
tests/testthat/test-olink_normalization_product.R
tests/testthat/test-read_npx_wide.R
tests/testthat/test-check_list.R
tests/testthat/test-olink_normalization_n.R
tests/testthat/test-olink_plate_randomizer.R
tests/testthat/test-olink_wilcox.R
tests/testthat/test-olink_color.R
tests/testthat/test-olink_normalization_utils.R
tests/testthat/test-read_npx_legacy.R
tests/testthat/test-dist_plot.R
tests/testthat/test-olink_normalization.R
tests/testthat/test-reference_data.R
tests/testthat/test-olink_bridge_selector.R
tests/testthat/test-olink_lmer.R
tests/testthat/test-read_npx_utils.R
tests/testthat/test-pca_plot.R
tests/testthat/test-read_npx_format.R
tests/testthat/test-check_integer.R
tests/testthat/test-read_npx_parquet.R
tests/testthat/test-get_others.R
tests/testthat/test-check_character.R
tests/testthat/test-read_npx_delim.R
tests/testthat/test-olink_anova.R
tests/testthat/test-plot_point_range.R
tests/testthat/test-clean_npx.R
tests/testthat/test-olink_pathway_enrichment.R
tests/testthat/test-plot_heatmap_helper.R
tests/testthat/test-plot_umap.R
tests/testthat/helper-get_data.R
tests/testthat/test-npxProcessing.R
tests/testthat/test-olink_lod.R
tests/testthat/test-check_numeric.R
tests/testthat/test-plot_heatmap.R
tests/testthat/test-olink_pathway_visualization.R
tests/testthat/test-plot_is_bridgeable.R
tests/testthat/test-osi_dist_plot.R
tests/testthat/test-olink_ordinal_regression.R
tests/testthat/test-olink_boxplot.R
tests/testthat/test-check_library_installed.R
tests/testthat/test-check_file.R
tests/testthat/helper-npx_wide.R
vignettes/OlinkAnalyze-Vignette.Rmd
data/manifest.rda
data/npx_data2.rda
data/npx_data1.rda
man/npx_data2.Rd
man/olink_norm_reference_id.Rd
man/olink_one_non_parametric_posthoc.Rd
man/check_out_df_arg.Rd
man/read_npx_format.Rd
man/check_npx_col_class.Rd
man/olink_display_plate_layout.Rd
man/get_all_olink_quant_types.Rd
man/check_is_dataset.Rd
man/check_is_boolean.Rd
man/check_is_integer.Rd
man/norm_internal_adjust_not_ref.Rd
man/olink_norm_input_validate.Rd
man/red_npx_wide_top_mid_long.Rd
man/read_npx_delim_long.Rd
man/olink_osi_dist_plot.Rd
man/olink_anova_posthoc.Rd
man/get_npx_file.Rd
man/check_olink_quant_type.Rd
man/get_file_ext.Rd
man/check_olink_data_type.Rd
man/manifest.Rd
man/npx_data1.Rd
man/olink_volcano_plot.Rd
man/check_is_arrow_object.Rd
man/olink_pathway_heatmap.Rd
man/read_npx.Rd
man/check_log_colname.Rd
man/olink_lod.Rd
man/check_npx_qcwarn_assays.Rd
man/olink_normalization_bridge.Rd
man/check_osi.Rd
man/olink_normalization_n.Rd
man/olink_plate_randomizer.Rd
man/get_olink_data_types.Rd
man/olink_dist_plot.Rd
man/get_field_separator.Rd
man/check_npx_olinkid.Rd
man/read_npx_format_get_platform.Rd
man/get_alt_colnames.Rd
man/olink_norm_input_check.Rd
man/check_npx_update_col_names.Rd
man/convert_read_npx_output.Rd
man/norm_internal_adjust_ref.Rd
man/read_npx_excel.Rd
man/norm_internal_rename_cols.Rd
man/check_library_installed.Rd
man/olink_normalization_n_check.Rd
man/check_npx_all_na_sample.Rd
man/olink_median_iqr_outlier.Rd
man/olink_norm_input_assay_overlap.Rd
man/check_columns.Rd
man/olink_fill_discrete.Rd
man/read_npx_delim.Rd
man/check_file_exists.Rd
man/read_npx_delim_wide.Rd
man/check_is_scalar_integer.Rd
man/read_npx_wide_middle.Rd
man/check_is_scalar_boolean.Rd
man/run_check_npx.Rd
man/olink_norm_input_ref_medians.Rd
man/read_npx_wide_check_top.Rd
man/get_all_olink_data_types.Rd
man/get_file_ext_summary.Rd
man/check_is_scalar_numeric.Rd
man/olink_pca_plot.Rd
man/olink_bridgeability_plot.Rd
man/olink_heatmap_plot.Rd
man/read_npx_format_get_format.Rd
man/olink_normalization_bridgeable.Rd
man/olink_one_non_parametric.Rd
man/check_is_character.Rd
man/check_is_list.Rd
man/check_file_extension.Rd
man/olink_ordinal_regression_posthoc.Rd
man/check_is_scalar_character.Rd
man/olink_median.Rd
man/norm_internal_assay_median.Rd
man/check_checksum.Rd
man/olink_color_gradient.Rd
man/get_olink_broader_platforms.Rd
man/read_npx_legacy_help.Rd
man/product_to_platesize.Rd
man/check_is_numeric.Rd
man/check_npx_col_names.Rd
man/olink_pal.Rd
man/remove_all_na_cols.Rd
man/norm_internal_reference_median.Rd
man/get_olink_quant_types.Rd
man/dot-check_params.Rd
man/olink_norm_input_class.Rd
man/read_npx_parquet.Rd
man/olink_pathway_enrichment.Rd
man/get_olink_platforms.Rd
man/dot-read_npx_args.Rd
man/olink_pathway_visualization.Rd
man/olink_display_plate_dist.Rd
man/olink_norm_input_check_df_cols.Rd
man/olink_norm_input_check_samples.Rd
man/norm_internal_bridge.Rd
man/read_npx_legacy.Rd
man/read_npx_wide.Rd
man/set_plot_theme.Rd
man/olink_bridge_selector.Rd
man/check_ht_fixed_lod_version.Rd
man/check_olink_platform.Rd
man/olink_norm_input_clean_assays.Rd
man/olink_norm_input_norm_method.Rd
man/olink_wilcox.Rd
man/check_npx_nonunique_uniprot.Rd
man/norm_internal_update_maxlod.Rd
man/read_npx_wide_npxs_version.Rd
man/clean_npx.Rd
man/check_is_tibble.Rd
man/mapping_file_id.Rd
man/check_npx_all_na_assays.Rd
man/norm_internal_subset.Rd
man/olink_boxplot.Rd
man/check_olink_broader_platform.Rd
man/read_npx_wide_bottom_version.Rd
man/olink_lmer_plot.Rd
man/olink_normalization_qs.Rd
man/olink_norm_input_cross_product.Rd
man/norm_internal_cross_product.Rd
man/ansi_collapse_quot.Rd
man/check_npx.Rd
man/read_npx_format_read.Rd
man/check_npx_duplicate_sample_ids.Rd
man/get_all_olink_broader_platforms.Rd
man/olink_format_rm_ext_ctrl.Rd
man/olink_normalization.Rd
man/check_darid.Rd
man/read_npx_wide_top.Rd
man/olink_ordinal_regression.Rd
man/olink_format_oid_no_overlap.Rd
man/olink_normalization_format.Rd
man/check_col_key.Rd
man/olink_normalization_project_name_check.Rd
man/get_df_output_print.Rd
man/norm_internal_adjust.Rd
man/olink_anova.Rd
man/get_checksum_file.Rd
man/olink_lmer_posthoc.Rd
man/assign_subject2plate.Rd
man/read_npx_wide_bottom.Rd
man/olink_fill_gradient.Rd
man/olink_normalization_subset.Rd
man/read_npx_format_get_quant.Rd
man/read_npx_wide_panel_version.Rd
man/read_npx_legacy_check.Rd
man/olink_color_discrete.Rd
man/olink_ttest.Rd
man/get_file_formats.Rd
man/olink_norm_product_id.Rd
man/olink_normalization_sample_check.Rd
man/read_npx_format_colnames.Rd
man/olink_lmer.Rd
man/olink_iqr.Rd
man/generate_plate_holder.Rd
man/olink_qc_plot.Rd
man/read_npx_wide_split_row.Rd
man/get_all_olink_platforms.Rd
man/dot-get_olink_data_details.Rd
man/olink_umap_plot.Rd
man/dot-downstream_fun_args.Rd
man/read_npx_zip.Rd
man/figures/bridgeable_plt_MedianCenter.png
man/figures/olink_pathway_heatmap_ora.png
man/figures/olink_boxplot.png
man/figures/set_plot_theme_boxplot.png
man/figures/olink_heatmap_plot.png
man/figures/olink_volcano_plot.png
man/figures/olink_fill_discrete_boxplot.png
man/figures/small_logo.png
man/figures/olink_pathway_heatmap_gsea.png
man/figures/OA_v5.0_flowchart.png
man/figures/olink_umap_plot.png
man/figures/olink_lmer_plot.png
man/figures/logo.html
man/figures/olink_boxplot_anova_posthoc.png
