read_npx_zip: Helper function to read in Olink Explore zip csv files

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Helper function to read in Olink Explore zip csv files

Description

Helper function to read in Olink Explore zip csv files

Usage

read_npx_zip(filename)

Arguments

filename

Path to Olink Software output zip file.

Value

A "tibble" in long format. Some of the columns are:

• SampleID: Sample ID

• Index: Index

• OlinkID: Olink ID

• UniProt: UniProt ID

• Assay: Protein symbol

• MissingFreq: Proportion of sample below LOD

• Panel_Version: Panel Version

• PlateID: Plate ID

• QC_Warning: QC Warning Status

• LOD: Limit of detection

• NPX: Normalized Protein Expression

Additional columns may be present or missing depending on the platform

Examples

try({ # May fail if dependencies are not installed
file <- system.file("extdata", "Example_NPX_Data.csv", package = "OlinkAnalyze")
read_NPX(file)
})

OlinkAnalyze documentation built on Sept. 25, 2024, 9:07 a.m.