OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

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372
Source code
116
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OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink
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API

API for OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

Global functions
.check_params Man page Source code
.downstream_fun_args Man page Source code
.get_olink_data_details Man page Source code
.read_npx_args Man page Source code
ansi_collapse_quot Man page Source code
assign_subject2plate Man page Source code
bridgeability_iqr_range_plt Source code
bridgeability_prep_data Source code
bridgeability_r2_plt Source code
check_checksum Man page Source code
check_col_key Man page Source code
check_columns Man page Source code
check_darid Man page Source code
check_file_exists Man page Source code
check_file_extension Man page Source code
check_ht_fixed_lod_version Man page Source code
check_is_arrow_object Man page Source code
check_is_boolean Man page Source code
check_is_character Man page Source code
check_is_dataset Man page Source code
check_is_integer Man page Source code
check_is_list Man page Source code
check_is_numeric Man page Source code
check_is_scalar_boolean Man page Source code
check_is_scalar_character Man page Source code
check_is_scalar_integer Man page Source code
check_is_scalar_numeric Man page Source code
check_is_tibble Man page Source code
check_library_installed Man page Source code
check_log_colname Man page Source code
check_npx Man page Source code
check_npx_all_na_assays Man page Source code
check_npx_all_na_sample Man page Source code
check_npx_col_class Man page Source code
check_npx_col_names Man page Source code
check_npx_duplicate_sample_ids Man page Source code
check_npx_nonunique_uniprot Man page Source code
check_npx_olinkid Man page Source code
check_npx_qcwarn_assays Man page Source code
check_npx_update_col_names Man page Source code
check_olink_broader_platform Man page Source code
check_olink_data_type Man page Source code
check_olink_platform Man page Source code
check_olink_quant_type Man page Source code
check_osi Man page Source code
check_out_df_arg Man page Source code
check_pe_inputs Source code
check_test_mode Source code
clean_assay_na Source code
clean_assay_type Source code
clean_assay_warning Source code
clean_col_class Source code
clean_control_sample_id Source code
clean_duplicate_sample_id Source code
clean_invalid_oid Source code
clean_nonunique_uniprot Source code
clean_npx Man page Source code
clean_qc_warning Source code
clean_sample_type Source code
convert_read_npx_output Man page Source code
data_prep Source code
fonts_system Source code
generate_plate_holder Man page Source code
get_all_olink_broader_platforms Man page Source code
get_all_olink_data_types Man page Source code
get_all_olink_platforms Man page Source code
get_all_olink_quant_types Man page Source code
get_alt_colnames Man page Source code
get_checksum_file Man page Source code
get_df_output_print Man page Source code
get_field_separator Man page Source code
get_file_ext Man page Source code
get_file_ext_summary Man page Source code
get_file_formats Man page Source code
get_font_path Source code
get_npx_file Man page Source code
get_olink_broader_platforms Man page Source code
get_olink_data_types Man page Source code
get_olink_platforms Man page Source code
get_olink_quant_types Man page Source code
gsea_pathwayenrichment Source code
has_buggy_dunn_test Source code
helper_non_overlap_assays Source code
int_norm_count Source code
internal_anova Source code
manifest Man page
mapping_file_id Man page
norm_internal_adjust Man page Source code
norm_internal_adjust_not_ref Man page Source code
norm_internal_adjust_ref Man page Source code
norm_internal_assay_median Man page Source code
norm_internal_bridge Man page Source code
norm_internal_cross_product Man page Source code
norm_internal_reference_median Man page Source code
norm_internal_rename_cols Man page Source code
norm_internal_subset Man page Source code
norm_internal_update_maxlod Man page Source code
npxProcessing_forDimRed Source code
npx_data1 Man page
npx_data2 Man page
olink_anova Man page Source code
olink_anova_posthoc Man page Source code
olink_boxplot Man page Source code
olink_bridge_selector Man page Source code
olink_bridgeability_plot Man page Source code
olink_bridgeselector Man page Source code
olink_calculate_pca Source code
olink_color_discrete Man page Source code
olink_color_gradient Man page Source code
olink_displayPlateDistributions Man page
olink_displayPlateLayout Man page
olink_display_plate_dist Man page Source code
olink_display_plate_layout Man page Source code
olink_dist_plot Man page Source code
olink_fill_discrete Man page Source code
olink_fill_gradient Man page Source code
olink_fixed_lod Source code
olink_format_oid_no_overlap Man page Source code
olink_format_rm_ext_ctrl Man page Source code
olink_heatmap_plot Man page Source code
olink_iqr Man page Source code
olink_lmer Man page Source code
olink_lmer_plot Man page Source code
olink_lmer_posthoc Man page Source code
olink_lod Man page Source code
olink_lod_internal Source code
olink_median Man page Source code
olink_median_iqr_outlier Man page Source code
olink_nc_lod Source code
olink_norm_input_assay_overlap Man page
olink_norm_input_check Man page Source code
olink_norm_input_check_df_cols Man page Source code
olink_norm_input_check_samples Man page
olink_norm_input_class Man page Source code
olink_norm_input_clean_assays Man page
olink_norm_input_cross_product Man page
olink_norm_input_norm_method Man page
olink_norm_input_ref_medians Man page
olink_norm_input_validate Man page Source code
olink_norm_product_id Man page
olink_norm_reference_id Man page
olink_normalization Man page Source code
olink_normalization_bridge Man page
olink_normalization_bridgeable Man page Source code
olink_normalization_format Man page Source code
olink_normalization_n Man page Source code
olink_normalization_n_check Man page
olink_normalization_project_name_check Man page
olink_normalization_qs Man page Source code
olink_normalization_sample_check Man page
olink_normalization_subset Man page
olink_one_non_parametric Man page Source code
olink_one_non_parametric_posthoc Man page Source code
olink_ordinalRegression Man page
olink_ordinalRegression_posthoc Man page
olink_ordinal_regression Man page Source code
olink_ordinal_regression_posthoc Man page Source code
olink_osi_dist_plot Man page Source code
olink_pal Man page Source code
olink_pathway_enrichment Man page Source code
olink_pathway_heatmap Man page Source code
olink_pathway_visualization Man page Source code
olink_pca_plot Man page Source code
olink_pca_plot.internal Source code
olink_plate_randomizer Man page Source code
olink_qc_plot Man page Source code
olink_ttest Man page Source code
olink_umap_plot Man page Source code
olink_umap_plot.internal Source code
olink_volcano_plot Man page Source code
olink_wilcox Man page Source code
ora_pathwayenrichment Source code
pc_norm_count Source code
pheatmap_annotate_heatmap Source code
pheatmap_color_heatmap Source code
pheatmap_extract_ellipsis_arg Source code
pheatmap_lst_styling Source code
pheatmap_run Source code
pheatmap_set_plot_theme Source code
plot_heatmap_check_inputs Source code
plot_heatmap_clean_df Source code
plot_heatmap_df_to_wide Source code
plot_heatmap_pheatmap_args Source code
product_to_platesize Man page Source code
quiet_dunn Source code
read_NPX Man page
read_npx Man page Source code
read_npx_csv Man page
read_npx_delim Man page Source code
read_npx_delim_long Man page Source code
read_npx_delim_wide Man page Source code
read_npx_excel Man page Source code
read_npx_format Man page Source code
read_npx_format_colnames Man page Source code
read_npx_format_get_format Man page Source code
read_npx_format_get_platform Man page Source code
read_npx_format_get_quant Man page Source code
read_npx_format_read Man page Source code
read_npx_legacy Man page
read_npx_legacy_check Man page
read_npx_legacy_help Man page Source code
read_npx_parquet Man page Source code
read_npx_wide Man page Source code
read_npx_wide_bottom Man page Source code
read_npx_wide_bottom_version Man page Source code
read_npx_wide_check_top Man page Source code
read_npx_wide_middle Man page Source code
read_npx_wide_npxs_version Man page Source code
read_npx_wide_panel_version Man page Source code
read_npx_wide_split_row Man page Source code
read_npx_wide_top Man page Source code
read_npx_zip Man page Source code
red_npx_wide_top_mid_long Man page Source code
register_font Source code
remove_all_na_cols Man page Source code
results_to_genelist Source code
run_check_npx Man page Source code
run_clean_npx Source code
select_ont Source code
set_plot_theme Man page Source code
single_lmer Source code
single_posthoc Source code
test_prep Source code
warn_if_buggy_dunn_test Source code
OlinkAnalyze documentation built on June 24, 2026, 1:06 a.m.

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