read_npx_parquet: Helper function to read in Olink Explore parquet output files

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Helper function to read in Olink Explore parquet output files

Description

Helper function to read in Olink Explore parquet output files

Usage

read_npx_parquet(filename)

Arguments

filename

Path to Olink Software parquet output file.

Value

A "tibble" in long format. Some of the columns are:

• SampleID: Sample ID

• OlinkID: Olink ID

• UniProt: UniProt ID

• Assay: Protein symbol

• PlateID: Plate ID

• Count: Counts from sequences

• ExtNPX: External control normalized counts

• NPX: Normalized Protein Expression

Additional columns may be present or missing depending on the platform

Examples

file <- system.file("extdata", "Example_NPX_Data.csv", package = "OlinkAnalyze")
read_NPX(file)

OlinkAnalyze documentation built on Nov. 4, 2023, 1:07 a.m.