olink_norm_input_cross_product: Check if bridge or cross-platform normalization
In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

View source: R/olink_normalization_utils.R

olink_norm_input_cross_product

R Documentation

Check if bridge or cross-platform normalization

Description

A function to check whether we are to perform simple bridge normalization, or cross-platform (Olink Explore 3072 - Olink Explore HT/Olink Reveal) normalization.

The function uses the internal dataset eHT_e3072_mapping to determine the product source of each dataset. If both datasets originate from the same Olink product, then it will return bridge. If the datasets to be normalized originate from Olink Explore HT and Olink Explore 3072 or Olink Reveal and Olink Explore 3072, it will return norm_cross_product. In any other case an error is thrown.

Usage

olink_norm_input_cross_product(
  lst_df,
  lst_cols,
  reference_project,
  product_ids,
  ref_ids
)

Arguments

`lst_df`	Named list of datasets to be normalized.
`lst_cols`	Named list of vectors with the required column names for each dataset in `lst_df`.
`reference_project`	Project name of reference_project. Should be one of `df1_project_nr` or `df2_project_nr`. Indicates the project to which the other project is adjusted to.
`product_ids`	Named character vector with the Olink product name that each input dataset matches to.
`ref_ids`	Named character vector with `df1_project_nr` and `df2_project_nr` marked as "ref" and "not_ref".

Value

Character string indicating the type of normalization to be performed. One of bridge, subset, ref_median or norm_cross_product. # nolint And the updated list of datasets in case of cross-platform normalization.