olink_norm_input_clean_assays: Check datasets and reference_medians for unexpected Olink...

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Check datasets and reference_medians for unexpected Olink identifiers or excluded assays

Description

Check datasets and reference_medians for unexpected Olink identifiers or excluded assays

Usage

olink_norm_input_clean_assays(lst_df, reference_medians, lst_cols, norm_mode)

Arguments

lst_df	Named list of datasets to be normalized.
reference_medians	Dataset with columns "OlinkID" and "Reference_NPX". Used for reference median normalization.
lst_cols	Named list of vectors with the required column names for each dataset in lst_df.
norm_mode	Character string indicating the type of normalization to be performed. Expecting one of bridge, subset, ref_median or norm_cross_product. # nolint

Value

A named list containing lst_df and reference_medians stripped from unexpected Olink identifiers or excluded assays

Author(s)

Klev Diamanti

OlinkAnalyze documentation built on April 4, 2025, 3:26 a.m.