read_npx_legacy_help: Help function utilizing functions from 'read_npx_format' and...

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Help function utilizing functions from read_npx_format and read_npx_wide to streamline read_npx_legacy

Description

Help function utilizing functions from read_npx_format and read_npx_wide to streamline read_npx_legacy

Usage

read_npx_legacy_help(
  file,
  out_df,
  olink_platform = NULL,
  data_type = NULL,
  data_type_no_accept = c("Ct")
)

Arguments

file	Path to Olink software output file in wide format. Expected one of file extensions "xls", "xlsx", "csv", or "txt".
out_df	The class of the output dataset. One of "tibble" or "arrow". Defaults to "tibble".
olink_platform	Olink platform used to generate the input file. One of NULL (default) for auto-detection, "Flex", "Focus", "Target 48", or "Target 96".
data_type	Quantification method of the input data. One of "Ct", "NPX", or "Quantified". Defaults to NULL for auto-detection.
data_type_no_accept	Character vector of data types that should be rejected (default = "Ct").

Value

A list of objects containing the following:

• olink_platform: auto-detected Olink platform. One of "Flex", "Focus", "Target 48", and "Target 96".

• long_format: auto-detected Olink format. Should always be "FALSE".

• data_type: auto-detected Olink data type. One of "NPX" and "Quantified". # nolint: line_length_linter

• df_split: list of 2 tibbles. Top matrix from the Olink wide file, and middle combined with bottom matrix.

• npxs_v: Olink NPX software version.

• bottom_mat_v: bottom matrix version based on olink_wide_bottom_matrix.

• format_spec: specifications of the wide format based on olink_wide_spec.

Author(s)

Klev Diamanti

OlinkAnalyze documentation built on June 24, 2026, 1:06 a.m.