read_npx_csv: Helper function to read in Olink Explore csv or txt files

In OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink

Helper function to read in Olink Explore csv or txt files

Description

Helper function to read in Olink Explore csv or txt files

Usage

read_npx_csv(filename)

Arguments

filename

Path to Olink Software output txt of csv file.

Value

A "tibble" in long format. Some of the columns are:

• SampleID: Sample ID

• Index: Index

• OlinkID: Olink ID

• UniProt: UniProt ID

• Assay: Protein symbol

• MissingFreq: Proportion of sample below LOD

• Panel_Version: Panel Version

• PlateID: Plate ID

• QC_Warning: QC Warning Status

• LOD: Limit of detection

• NPX: Normalized Protein Expression

Additional columns may be present or missing depending on the platform

Examples

file <- system.file("extdata", "Example_NPX_Data.csv", package = "OlinkAnalyze")
read_NPX(file)

OlinkAnalyze documentation built on Sept. 25, 2024, 9:07 a.m.