PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) <arXiv:1809.09014>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Getting started

Package details

AuthorVenelin Mitov [aut, cre, cph]
MaintainerVenelin Mitov <[email protected]>
LicenseGPL (>= 3.0)
Version0.1.6
URL https://github.com/venelin/PCMBaseCpp https://venelin.github.io/PCMBase/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("PCMBaseCpp")

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PCMBaseCpp documentation built on Nov. 11, 2019, 5:09 p.m.