PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <DOI:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <DOI:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <DOI:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <DOI:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <DOI:10.1109/CISIS.2009.194>.

Package details

AuthorJavad zahiri [aut], Alireza mohammadi [aut, cre]
MaintainerAlireza mohammadi <alireza691111@gmail.com>
LicenseGPL-3
Version0.2.1
URL https://github.com/Alireza9651501005/PSSMCOOL
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("PSSMCOOL")

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PSSMCOOL documentation built on Oct. 25, 2020, 5:07 p.m.