Description Usage Arguments Value References Examples
In this function each column can be viewed as a stochastic time series, and each PSSM contains 20 columns, in other words, each PSSM contains 20 stochastic time series and Second-order moving average (SOMA) algorithm is applied to these columns to extract SOMA PSSM feature vector.
1 | SOMA_PSSM(pssm_name)
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pssm_name |
name of PSSM file |
feature vector of length 160
Y. Liang, S. J. J. o. M. G. Zhang, and Modelling, "Predict protein structural class by incorporating two different modes of evolutionary information into Chou's general pseudo amino acid composition," vol. 78, pp. 110-117, 2017.
1 | X<-SOMA_PSSM(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))
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