MBMGACPSSM: MBMGACPSSM feature

In PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

Description

In this function three different autocorrelation descriptors based on PSSM are adopted, which include: normalized Moreau-Broto autocorrelation, Moran autocorrelation and Geary autocorrelation descriptors.Autocorrelation descriptor is a powerful statistical tool and defined based on the distribution of amino acid properties along the sequence, which measures the correlation between two residues separated by a distance of d in terms of their evolution scores.

Usage

MBMGACPSSM(pssm_name)

Arguments

pssm_name

name of PSSM Matrix file

Value

feature vector of length 560

References

Y. Liang, S. Liu, S. J. M. C. i. M. Zhang, and i. C. Chemistry, "Prediction of protein structural class based on different autocorrelation descriptors of position-specific scoring matrix," vol. 73, no. 3, pp. 765-784, 2015.

Examples

X<-MBMGACPSSM(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))

PSSMCOOL documentation built on Jan. 4, 2022, 5:07 p.m.