single_Average: single Average feature
In PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)
Description
Usage
Arguments
Value
References
See Also
Examples
View source: R/single_average.R
Description
This descriptor is a variant of the Average Block descriptor and is designed to group together rows
related to the same amino acid, thus considering domains of a sequence with similar conservation rates.
Usage
1
single_Average(pssm_name)
Arguments
pssm_name
name of PSSM Matrix file
Value
feature vector of length 400
References
L. Nanni, A. Lumini, and S. J. T. S. W. J. Brahnam, "An empirical study of different approaches for protein classification,"
vol. 2014, 2014.
See Also
Examples
1
X<-single_Average(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))
PSSMCOOL documentation built on Jan. 4, 2022, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value References See Also Examples
View source: R/single_average.R
Description
This descriptor is a variant of the Average Block descriptor and is designed to group together rows related to the same amino acid, thus considering domains of a sequence with similar conservation rates.
Usage
1 | single_Average(pssm_name)
|
Arguments
pssm_name |
name of PSSM Matrix file |
Value
feature vector of length 400
References
L. Nanni, A. Lumini, and S. J. T. S. W. J. Brahnam, "An empirical study of different approaches for protein classification," vol. 2014, 2014.
See Also
Examples
1 | X<-single_Average(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.