FPSSM2: Mixture of Two FPSSM Features
In PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

This function takes two PSSM files as argument and uses FPSSM function for making feature vector of length 100 correspond to this pair of proteins.

1	FPSSM2(pssm_name1, pssm_name2, hk)

`pssm_name1`	The name of first PSSM Matrix file
`pssm_name2`	The name of second PSSM Matrix file
`hk`	a parameter that indicates which amino acid alphabet must be used

Feature vector of length 100

Zahiri, J., et al. (2013) PPIevo: protein-protein interaction prediction from PSSM based evolutionary information, Genomics, 102, 237-242.

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 s1<-system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL")
 s2<-system.file("extdata","C7GRQ3.txt.pssm",package="PSSMCOOL")
 s<-FPSSM2(s1,s2,8)

PSSMCOOL documentation built on Jan. 4, 2022, 5:07 p.m.

PSSMCOOL index

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