PSSMCOOL-package: PSSMCOOL:Extracting Various Feature vectors from PSSM Matrix

In PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

Description

This package is a Comprehensive toolkit for generating various numerical features from PSSM Matrix correspond to each protein sequence and covers all features introduced in POSSUM Package and some other new features. see PSSMCOOL_Rpubs for more information.

Author(s)

Maintainer: Alireza Mohammadi [e-mail]

Authors:

• Alireza Mohammadi [e-mail]

• Javad Zahiri [e-mail]

• Saber Mohammadi [e-mail]

See Also

All functions in this package:

• AATP_TPC

• AB_PSSM

• Averag_Block

• consunsus_sequence

• CS_PSe_PSSM

• DFMCA_PSSM

• Discrete_Cosine_Transform

• disulfid

• DP_PSSM

• dpc_pssm

• dwt_PSSM

• EDP_EEDP_MEDP

• FPSSM

• FPSSM2

• grey_pssm_pseAAC

• k_mers

• k_separated_bigrams_pssm

• kiderafactor

• LPC_PSSM

• MBMGACPSSM

• pse_pssm

• pssm400

• pssm_ac

• pssm_cc

• PSSM_SD

• pssm_seg

• PSSMBLOCK

• rpssm

• RPM_PSSM

• scsh2

• single_Average

• smoothed_PSSM

• SOMA_PSSM

• SVD_PSSM

• trigrame_pssm

Useful links:

• https://rpubs.com/alireza_69/640294

• https://github.com/BioCool-Lab/PSSMCOOL/

• Report bugs at https://github.com/BioCool-Lab/PSSMCOOL/issues

PSSMCOOL documentation built on Jan. 4, 2022, 5:07 p.m.