extract.partitionsNumber: Extract from object 'partitionsNumber'

In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Extract from object partitionsNumber

Description

extract.partitionsNumber extracts the number of partitions for a given sub-tree, either marked or non-marked.

Usage

## S3 method for class 'partitionsNumber'
extract(
  x,
  node = attr(x, "ntaxa") + 1,
  npart = attr(x, "npart"),
  marked = FALSE,
  ...
)

Arguments

x	an object of class partitionsNumber, result of function partitionsNumber.
node	the root node of the subtree where to get the result. Default to the root of the tree.
npart	the number of partitions (colors) allowed at the tips. Default to the value used in the call of function partitionsNumber (the maximum).
marked	whether to extract the marked (TRUE) or un-marked (FALSE) partitions. The number of models is the number of un-marked partitions. Default to FALSE.
...	unused.

Value

the number of partitions with npart colors, on the sub-tree starting at node, marked or not.

See Also

partitionsNumber

PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.