Man pages for Quartet
Comparison of Phylogenetic Trees Using Quartet and Split Measures
| AllQuartets | List all quartets |
| CompareQuartets | Compare quartet states by explicit enumeration |
| CompareQuartetsMulti | Compare one tree's quartets against others' |
| CompareSplits | Compare status of splits |
| Distances | Direct entry points to "tqDist" functions |
| dot-AddSlice | Add slice to 3D array |
| dot-CheckSize | Check tree size |
| dot-NormalizeStatus | Normalize element statuses to generate metric |
| dot-StatusToMatrix | Status vector to matrix |
| PairSharedQuartetStatus | Status of quartets that exist in two trees |
| PairSharedSplitStatus | Pair shared split status |
| PlotQuartet | Plot quartet on tree topologies |
| Quartet-package | Quartet |
| QuartetPoints | Plot tree differences on ternary plots |
| QuartetState | Quartet State(s) |
| QuartetStatus | Status of quartets |
| ResolvedQuartets | Count resolved quartets |
| SimilarityMetrics | Tree similarity measures |
| SplitStatus | Matching partitions |
| sq_trees | Eighteen example trees |
| SymmetricDifferenceLineEnds | Plot contours of equal symmetric difference on a ternary plot |
| TQDist | Wrapper for tqDist |
| tqdist_QuartetDistance | Direct entry points to 'tqDist' functions |
| TQFile | tqDist file generator |
| ValidateQuartetFile | Validate filenames |
| VisualizeQuartets | Visualize quartet difference on trees, by split |
