Files in Quartet
Comparison of Phylogenetic Trees Using Quartet and Bipartition Measures

MD5
NEWS.md
DESCRIPTION
README.md
NAMESPACE
inst/REFERENCES.bib
inst/preamble.tex
inst/Get_stuck_in.md
inst/CITATION
inst/doc/Tree-distance-metrics.R inst/doc/Critical-distances.pdf inst/doc/Critical-distances.R inst/doc/Tree-distance-metrics.pdf inst/doc/Critical-distances.Rmd inst/doc/Tree-distance-metrics.Rmd vignettes/Critical-distances.Rmd vignettes/Tree-distance-metrics.Rmd R/data.R R/ReleaseQuestions.R R/tqDist.r R/TernaryPoints.R R/RcppExports.R R/ResolvedQuartets.R R/PartitionDistance.R R/TreeManipulation.R R/QuartetDistance.R R/Metrics.R
src/HDTFactory.cpp
src/util.h
src/NewickParser.cpp
src/hdt.h
src/newick_parser.h
src/QuartetDistanceCalculator.cpp
src/HDTCountingG.cpp
src/templated_linked_list.h
src/AbstractDistanceCalculator.h
src/rooted_tree.h
src/unrooted_tree.h
src/rooted_tree_factory.h
src/HDT.cpp
src/RcppExports.cpp
src/hdt_factory.h
src/rTripletDist.cpp
src/memory_allocator.h
src/quartet_calc.h
src/HDTCountingLeaf.cpp
src/triplet_calc.h
src/counting_linked_list.h
src/AbstractDistanceCalculator.cpp
src/QuartetDistanceCalculator.h
src/counting_linked_list_num_only.h
src/RootedTree.cpp
src/HDTCountingIGToC.cpp
src/HDTCountingCTransform.cpp
src/HDTListUtils.cpp
src/HDTCountingCCToC.cpp
src/RootedTreeFactory.cpp
src/Quartet-init.c
src/int_stuff.h
src/TripletDistanceCalculator.h
src/rQuartetDist.cpp
src/TripletDistanceCalculator.cpp
src/int_stuff.cpp
man/QuartetPoints.Rd man/SimilarityMetrics.Rd man/PairSharedSplitStatus.Rd man/ResolvedQuartets.Rd man/PairSharedQuartetStatus.Rd man/QuartetStatus.Rd man/TQFile.Rd man/PlotQuartet.Rd man/CompareQuartets.Rd man/TQDist.Rd man/tqdist_QuartetDistance.Rd man/Distances.Rd man/AllQuartets.Rd man/SymmetricDifferenceLineEnds.Rd man/sq_trees.Rd man/StatusToMatrix.Rd man/SplitStatus.Rd man/UnshiftTree.Rd man/CompareSplits.Rd man/QuartetState.Rd man/ValidateQuartetFile.Rd
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/trees/test_tree3.new
tests/trees/quartet_unresolved.new
tests/trees/tree_ac-b.new
tests/trees/quartet1.new
tests/trees/five_trees.new
tests/trees/test_tree2.new
tests/trees/all_quartets.new
tests/trees/test_tree4.new
tests/trees/test_tree1.new
tests/trees/two_trees.new
tests/trees/unresolved1.new
tests/trees/tree_ab-c.new
tests/trees/two_quartets.new
tests/trees/quartet2.new
tests/trees/unresolved2.new
tests/trees/unresolved_list.new
tests/trees/one_quartet_twice.new
tests/trees/none.new
tests/testthat/test-ResolvedQuartets.R tests/testthat/test-1-tqdist.R tests/testthat/test-PartitionDistance.R tests/testthat/test-TernaryPoints.R tests/testthat/test-ZZZ-Metrics.R tests/testthat/test-QuartetDistance.R
data/sq_trees.rda
Quartet documentation built on March 6, 2019, 5:07 p.m.