SymmetricDifferenceLineEnds: Plot contours of equal symmetric difference on a ternary plot

In Quartet: Comparison of Phylogenetic Trees Using Quartet and Split Measures

Plot contours of equal symmetric difference on a ternary plot

Description

Assumes that tree 1 is perfectly resolved, but that the resolution of tree 2 can vary.

Usage

SymmetricDifferenceLineEnds(nsd)

SymmetricDifferenceLines(nsd, ...)

Arguments

nsd	Vector specifying normalized symmetric differences to plot.
...	Further parameters to pass to TernaryLines().

Value

Returns a matrix of dim ⁠(length(nsd), 6)⁠, with columns named r2a, da, sa, r2b, db and sb. Lines from a to b in each row connect points of equal symmetric difference.

Functions

• SymmetricDifferenceLines(): Plot the lines onto the active ternary plot.

Author(s)

Martin R. Smith ([e-mail])

Quartet documentation built on Nov. 1, 2024, 1:07 a.m.