tqdist_QuartetDistance | R Documentation |
Functions to calculate triplet and quartet distances between pairs of trees. Input is not checked for sanity.
tqdist_QuartetDistance(file1, file2) tqdist_QuartetAgreement(file1, file2) tqdist_QuartetAgreementEdge(edge1, edge2) tqdist_QuartetAgreementChar(string1, string2) tqdist_PairsQuartetDistance(file1, file2) tqdist_OneToManyQuartetAgreement(file1, fileMany) tqdist_OneToManyQuartetAgreementChar(tree, trees) tqdist_OneToManyQuartetAgreementEdge(edge, edges) tqdist_AllPairsQuartetDistance(file) tqdist_AllPairsQuartetDistanceChar(string) tqdist_AllPairsQuartetDistanceEdge(edges) tqdist_AllPairsQuartetAgreement(file) tqdist_AllPairsQuartetAgreementChar(string) tqdist_AllPairsQuartetAgreementEdge(edges) tqdist_TripletDistance(file1, file2) tqdist_PairsTripletDistance(file1, file2) tqdist_AllPairsTripletDistance(file)
file, file1, file2 |
Paths to files containing a tree or trees in Newick format. |
Functions are called from R with user-friendly functions such as
AllPairsQuartetDistance
.
The distance between the requested trees.
tqdist_QuartetAgreement
: Agreement of each quartet
tqdist_QuartetAgreementEdge
: Agreement of each quartet
tqdist_QuartetAgreementChar
: Agreement of each quartet
tqdist_PairsQuartetDistance
: Distance between pairs
tqdist_OneToManyQuartetAgreement
: Distance between pairs
tqdist_OneToManyQuartetAgreementChar
: Distance between pairs
tqdist_OneToManyQuartetAgreementEdge
: Distance between pairs
tqdist_AllPairsQuartetDistance
: Distance between all pairs
tqdist_AllPairsQuartetDistanceChar
: Distance between all pairs
tqdist_AllPairsQuartetDistanceEdge
: Distance between all pairs
tqdist_AllPairsQuartetAgreement
: Agreement between all pairs of trees
tqdist_AllPairsQuartetAgreementChar
: Agreement between all pairs of trees
tqdist_AllPairsQuartetAgreementEdge
: Agreement between all pairs of trees
tqdist_TripletDistance
: Triplet distance between two trees
tqdist_PairsTripletDistance
: Triplet distance between pairs
tqdist_AllPairsTripletDistance
: Triplet distance between all pairs
Martin R. Smith, after Andreas Sand
Sand2014Quartet
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