CompareSplits | R Documentation |
Reports whether splits are present or contradicted in a set of reference splits.
CompareSplits(splits, splits2) CompareBipartitions(splits, splits2)
splits |
An object that can be coerced into class |
splits2 |
Splits against which to compare |
A named vector of eight integers, listing the number of unique splits that:
N exist in total; i.e. the number of splits in splits1
plus the
number in splits2
,
equivalent to 2 s + d1 + d2 + r1 + r2;
P1 occur in splits1
P2 occur in splits2
s occur in both splits1
and splits2
;
d1 occur in splits1
but are contradicted by splits2
;
d2 occur in splits2
but are contradicted by splits1
;
r1 occur in splits1
only, being neither present in nor contradicted by splits2
;
r2 occur in splits2
only, being neither present in nor contradicted by splits1
;
RF occur in one tree only; i.e. d1 + d2 + r1 + r2, the Robinson-Foulds distance.
Martin R. Smith (martin.smith@durham.ac.uk)
Estabrook1985Quartet
Robinson1981Quartet
Equivalent function for quartets: CompareQuartets()
Other element-by-element comparisons:
CompareQuartetsMulti()
,
CompareQuartets()
,
PairSharedQuartetStatus()
,
QuartetState()
,
SharedQuartetStatus()
,
SplitStatus()
splits1 <- TreeTools::BalancedTree(8) splits2 <- TreeTools::PectinateTree(8) CompareSplits(splits1, splits2)
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