ResolvedQuartets | R Documentation |
Counts how many quartets are resolved or unresolved in a given tree, following Brodal et al. (2013).
ResolvedQuartets(tree, countTriplets = FALSE) ResolvedTriplets(tree)
tree |
A tree of class |
countTriplets |
Logical; if |
Trees with more than 477 leaves risk encountering integer overflow errors, as the number of quartets is larger than can be stored in R's signed 32-bit integer representation. If warnings are thrown, check subsequent calculations for errors.
ResolvedQuartets()
returns a vector of length two, listing the
number of quartets (or triplets)
that are [1] resolved; [2] unresolved in the specified tree.
ResolvedTriplets
: Convenience function to calculate the number of
resolved/unresolved triplets.
Martin R. Smith (martin.smith@durham.ac.uk)
Brodal2013Quartet
Other quartet counting functions:
AllQuartets()
,
CompareQuartetsMulti()
,
CompareQuartets()
data(sq_trees) ResolvedTriplets(sq_trees$collapse_some) # Equivalent to: ResolvedQuartets(sq_trees$collapse_some, countTriplets = TRUE) vapply(sq_trees, ResolvedQuartets, integer(2))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.