API for RADami
Phylogenetic Analysis of RADseq Data
| Global functions | |
|---|---|
| RADami | Man page |
| RADami-package | Man page |
| compare.all.trees | Man page Source code |
| consensus.pyRAD | Man page Source code |
| filter.by | Man page Source code |
| gen.RAD.loci.datasets | Man page Source code |
| genTrees | Man page Source code |
| genotypes.pyRAD.loci | Man page Source code |
| get.raxml.siteLikelihoods | Man page Source code |
| get.raxml.treeLikelihoods | Man page Source code |
| grab.pyRAD.locus | Man page Source code |
| group.subset.pyRAD.loci | Source code |
| lengths.report | Man page Source code |
| locus.dist | Man page Source code |
| match.lnL.to.trees | Man page Source code |
| oak.rads | Man page |
| oak.tree | Man page |
| overlap.report | Man page Source code |
| pairwise.fst.loci | Man page Source code |
| plot.locus.dist | Man page Source code |
| plot.partitionedRAD | Man page Source code |
| plot.rankedPartitionedRAD | Man page Source code |
| print.pyRAD.loci | Man page Source code |
| rad2mat | Man page Source code |
| rad2phy | Man page Source code |
| rank.partitionedRAD | Man page Source code |
| read.pyRAD | Man page Source code |
| rtreePhylo | Man page Source code |
| subset.pyRAD.loci | Man page Source code |
| summary.pyRAD.loci | Man page Source code |
| tidyName | Man page Source code |
| unique.multiPhylo | Source code |
| write.DNAStringSet | Man page Source code |
