Description Usage Arguments Value Author(s) See Also
View source: R/get.raxml.treeLikelihoods.R
Reads the info file from a RAxML site-likelihood analysis with multiple input trees.
Probably not often needed on its own, but used in match.lnL.to.trees
.
1 | get.raxml.treeLikelihoods(x, logfile = NA)
|
x |
file name of a RAxML .info file from site-likelihood analysis |
logfile |
name of a log file, useful for recording any files that were not successfully read in |
A named vector of class double
with tree likelihoods, where the names are character
equivalents of the tree numbers; or, if the file had no trees in it, the character vector
"FAIL"
Andrew Hipp
match.lnL.to.trees
,
get.raxml.siteLikelihoods
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