get.raxml.treeLikelihoods: Extract likelihoods from a RAxML info file
In RADami: Phylogenetic Analysis of RADseq Data

Description Usage Arguments Value Author(s) See Also

View source: R/get.raxml.treeLikelihoods.R

Reads the info file from a RAxML site-likelihood analysis with multiple input trees. Probably not often needed on its own, but used in match.lnL.to.trees.

1	get.raxml.treeLikelihoods(x, logfile = NA)

`x`	file name of a RAxML .info file from site-likelihood analysis
`logfile`	name of a log file, useful for recording any files that were not successfully read in

A named vector of class double with tree likelihoods, where the names are character equivalents of the tree numbers; or, if the file had no trees in it, the character vector "FAIL"

Andrew Hipp

match.lnL.to.trees, get.raxml.siteLikelihoods

RADami documentation built on May 30, 2017, 8:23 a.m.