write.DNAStringSet: Writes a sequence matrix to phylip format

In RADami: Phylogenetic Analysis of RADseq Data

Description

This function writes a Biostrings DNAStringSet object to a file. Currently, phylip and fasta formats are supported

Usage

write.DNAStringSet(x, format= c('phylip', 'fasta'), padding = 30,
                  filename = "DNAStringSetOut.phy",
                  fastaPrefix = ">")

Arguments

x	an object of class DNAStringSet
format	at this point, only fasta and phylip formats are supported
padding	total number of characters, including sequence title, to place before each sequence
filename	full name of file and path
fastaPrefix	prefix character to add to taxon label for fasta files

Value

At this point, returns a 0 to indicate successful completion

Author(s)

Andrew Hipp

See Also

rad2phy

RADami documentation built on May 30, 2017, 8:23 a.m.