get.raxml.siteLikelihoods: Read likelihoods from a RAxML_perSiteLLs file
In RADami: Phylogenetic Analysis of RADseq Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/get.raxml.siteLikelihoods.R
Description
This function is used to import likelihoods from a RAxML site likelihoods export.
Usage
1
Arguments
x
Filename of the RAxML_perSiteLLs file
Details
Not used in any downstream analyses currently in RADbuddy.
Value
A matrix with trees as rows, site lnL as columns
Author(s)
Andrew Hipp
See Also
get.raxml.treeLikelihoods,
match.lnL.to.trees
RADami documentation built on May 30, 2017, 8:23 a.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/get.raxml.siteLikelihoods.R
Description
This function is used to import likelihoods from a RAxML site likelihoods export.
Usage
1 |
Arguments
x |
Filename of the RAxML_perSiteLLs file |
Details
Not used in any downstream analyses currently in RADbuddy.
Value
A matrix with trees as rows, site lnL as columns
Author(s)
Andrew Hipp
See Also
get.raxml.treeLikelihoods,
match.lnL.to.trees
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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