group.rich: Barplot Of Richness For Each Level Of A Given Metadata...

Description Usage Arguments Value Author(s) See Also Examples

Description

This function first use specpool to estimate the extrapolated species richness in a species pool (levels of metadata variable), and the number of unobserved species, then do a barplot.

Usage

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2

Arguments

otu

an OTU table.

meta

the metadata table to be used (must have same samples as data.

factor

a character string. Must be one of the metadata variables.

file

optional. Filename that the plot to be saved to.

ext

optional. Filename extension, type of image to be saved.

width

an integer. Filter OTU table by counts.

height

an integer. Filter OTU table by counts.

Value

This function returns a barplot of species richness for a given metadata variable.

Author(s)

Wen Chen.

See Also

specpool, specpool

Examples

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Example output

Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-7
Loading required package: ggplot2
Registered S3 method overwritten by 'ade4':
  method       from  
  summary.dist labdsv
Using ind as id variables

RAM documentation built on May 2, 2019, 3:04 p.m.