OTU.rarefy: Create Rarefied OTU Tables

In RAM: R for Amplicon-Sequencing-Based Microbial-Ecology

Description

This function output rarefied OTU tables using rrarefy. This function may take long time for large dataset, e.g. over 100k otus x 45 samples.

Usage

OTU.rarefy(data, sample=NULL)

Arguments

data	a list of otu tables. See also RAM.input.formatting.
sample	an integer represent the sampling size.

Value

This function returns a list of rarefied otu tables.

Note

See also rrarefy

Author(s)

Wen Chen

See Also

RAM.input.formatting.

Examples

## Not run: 
data(ITS1, ITS2)
otus.rf <- OTU.rarefy(data=list(ITS1=ITS1, ITS2=ITS2),
                      sample=NULL)

## End(Not run)

Example output

Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.4-4
Loading required package: ggplot2
sh: 1: cannot create /dev/null: Permission denied
sh: 1: cannot create /dev/null: Permission denied

RAM documentation built on May 2, 2019, 3:04 p.m.