Man pages for RBesT
R Bayesian Evidence Synthesis Tools
| AS | Ankylosing Spondylitis. |
| asthma | Asthma exacerbation recurrent event data. |
| automixfit | Automatic Fitting of Mixtures of Conjugate Distributions to a... |
| BinaryExactCI | Exact Confidence interval for Binary Proportion |
| chains2sample | Scrambles the order of a mcmc array object for usage as a... |
| colitis | Ulcerative Colitis. |
| colVars | Fast column-wise calculation of unbiased variances |
| create_decision1S_1sided | Internal Constructor for 1 Sample One-sided Decision Function |
| create_decision1S_2sided | Internal Constructor for 1 Sample Two-sided Decision Function |
| create_decision1S_atomic | Internal Constructor for Atomic 1 Sample One-sided Decision... |
| create_decision2S_1sided | Internal Constructor for 2 Sample One-sided Decision Function |
| create_decision2S_2sided | Internal Constructor for 2 Sample Two-sided Decision Function |
| create_decision2S_atomic | Internal Constructor for Atomic 2 Sample One-sided Decision... |
| crohn | Crohn's disease. |
| Curry | Functional programming utilities |
| dBetaBinomial | Beta-Binomial Probabilities |
| decision1S | Decision Function for 1 Sample Designs |
| decision1S_boundary | Decision Boundary for 1 Sample Designs |
| decision2S | Decision Function for 2 Sample Designs |
| decision2S_boundary | Decision Boundary for 2 Sample Designs |
| dlink-set | Transform Densities with a link function |
| dot-gmap_all_diag_df | Combine warmup and post-warmup diagnostics and return... |
| dot-gmap_all_draws | Combine warmup and post-warmup posterior draws |
| dot-gmap_diag_df | Convert diagnostic draws to bayesplot's long data frame... |
| dot-gmap_divergence_count | Count divergent transitions from stored sampler diagnostics |
| dot-gmap_draws_array | Access Posterior Draws For gMAP Helpers |
| dot-gmap_empty_diag_draws_array | Create An Empty Sampler Diagnostics Array For A gMAP Skeleton |
| dot-gmap_empty_draws_array | Create An Empty Posterior Draws Array For A gMAP Skeleton |
| dot-gmap_empty_draws_summary | Create An NA Summary Table For Empty Draws |
| dot-gmap_extract_diag_draws_array | Extract non-permuted sampler diagnostics from a Stan fit |
| dot-gmap_extract_draws_array | Extract non-permuted posterior draws from a Stan fit |
| dot-gmap_mcmc_metadata | Collect MCMC metadata for a gMAP fit |
| dot-gmap_sampler_summary | Summarize sampler diagnostics from stored draws |
| dot-gmap_summary | Summarize selected posterior variables from stored draws |
| dot-gmap_thin_draws | Thin Draws While Preserving Empty Skeleton Draws |
| dot-gmap_warn_no_samples | Warn When A gMAP Object Has No Posterior Samples |
| draws-RBesT | Transform 'gMAP' to 'draws' objects |
| ess | Effective Sample Size for a Conjugate Prior |
| fill | Fill numeric objects |
| forest_plot | Forest Plot |
| gMAP | Meta-Analytic-Predictive Analysis for Generalized Linear... |
| integrate_density | Integrate a function against a mixture density |
| integrate_density_log | Integrate a log-space function against a mixture density |
| integrate_gauss_quadrature | Gaussian quadrature for mixture density integration |
| knn | k nearest neighbor algorithm for multi-variate data |
| likelihood | Read and Set Likelihood to the Corresponding Conjugate Prior |
| lodds | Logit (log-odds) and inverse-logit function. |
| log_inv_logit | Numerically stable log of the inv_logit function |
| logLik.EM | Extract log likelihood from fitted EM objects |
| mix | Mixture Distributions |
| mixbeta | Beta Mixture Density |
| mixcombine | Combine Mixture Distributions |
| mixdiff | Difference of mixture distributions |
| mixdist3 | Utility function to instantiate 2 parameter mixture... |
| mixfit | Fit of Mixture Densities to Samples |
| mixgamma | The Gamma Mixture Distribution |
| mixjson | Write and Read a Mixture Object with JSON |
| mixlink | takes x and transforms it according to the defined link... |
| mixmvnorm | Multivariate Normal Mixture Density |
| mixnorm | Normal Mixture Density |
| mixplot | Plot mixture distributions |
| mixstanvar | Mixture distributions as 'brms' priors |
| nsamples.gMAP | Return the number of posterior samples |
| oc1S | Operating Characteristics for 1 Sample Design |
| oc2S | Operating Characteristics for 2 Sample Design |
| plot.EM | Diagnostic plots for EM fits |
| plot.gMAP | Diagnostic plots for gMAP analyses |
| pos1S | Probability of Success for a 1 Sample Design |
| pos2S | Probability of Success for 2 Sample Design |
| postmix | Conjugate Posterior Analysis |
| preddist | Predictive Distributions for Mixture Distributions |
| predict.gMAP | Predictions from gMAP analyses |
| RBesT-package | R Bayesian Evidence Synthesis Tools |
| resolve_sigma_family | Resolve family/sigma arguments into a sigma_fun closure |
| robustify | Robustify Mixture Priors |
| sigma_from_family | Compute sigma as a function of eta for a GLM family |
| support | Support of Distributions |
| transplant | Transplant. |
| uniroot_int | Find root of univariate function of integers |
