preddist: Predictive Distributions for Mixture Distributions

In RBesT: R Bayesian Evidence Synthesis Tools

Predictive Distributions for Mixture Distributions

Description

Predictive distribution for mixture of conjugate distributions (beta, normal, gamma).

Usage

preddist(mix, ...)

## S3 method for class 'betaMix'
preddist(mix, n = 1, ...)

## S3 method for class 'normMix'
preddist(mix, n = 1, sigma, ...)

## S3 method for class 'gammaMix'
preddist(mix, n = 1, ...)

## S3 method for class 'mvnormMix'
preddist(mix, ...)

Arguments

mix	mixture distribution
...	includes arguments which depend on the specific prior-likelihood pair, see description below.
n	predictive sample size, set by default to 1
sigma	The fixed reference scale of a normal mixture. If left unspecified, the default reference scale of the mixture is assumed.

Details

Given a mixture density (either a posterior or a prior)

p(\theta,\mathbf{w},\mathbf{a},\mathbf{b})

and a data likelihood of

y|\theta \sim f(y|\theta),

the predictive distribution of a one-dimensional summary y_n of $n$ future observations is distributed as

y_n \sim \int p(\theta,\mathbf{w},\mathbf{a},\mathbf{b}) \, f(y_n|\theta) \, d\theta .

This distribution is the marginal distribution of the data under the mixture density. For binary and Poisson data y_n = \sum_{i=1}^n y_i is the sum over future events. For normal data, it is the mean\bar{y}_n = 1/n \sum_{i=1}^n y_i.

Value

The function returns for a normal, beta or gamma mixture the matching predictive distribution for y_n.

Methods (by class)

• preddist(betaMix): Obtain the matching predictive distribution for a beta distribution, the BetaBinomial.

• preddist(normMix): Obtain the matching predictive distribution for a Normal with constant standard deviation. Note that the reference scale of the returned Normal mixture is meaningless as the individual components are updated appropriatley.

• preddist(gammaMix): Obtain the matching predictive distribution for a Gamma. Only Poisson likelihoods are supported.

• preddist(mvnormMix): Multivariate normal mixtures predictive densities are not (yet) supported.

Supported Conjugate Prior-Likelihood Pairs

Prior/Posterior	Likelihood	Predictive	Summaries
Beta	Binomial	Beta-Binomial	n, r
Normal	Normal (fixed \sigma)	Normal	n, m, se
Gamma	Poisson	Gamma-Poisson	n, m
Gamma	Exponential	Gamma-Exp (not supported)	n, m

Examples

# Example 1: predictive distribution from uniform prior.
bm <- mixbeta(c(1,1,1))
bmPred <- preddist(bm, n=10)
# predictive proabilities and cumulative predictive probabilities
x <- 0:10
d <- dmix(bmPred, x)
names(d) <- x
barplot(d)
cd <- pmix(bmPred, x)
names(cd) <- x
barplot(cd)
# median
mdn <- qmix(bmPred,0.5)
mdn

# Example 2: 2-comp Beta mixture

bm <- mixbeta( inf=c(0.8,15,50),rob=c(0.2,1,1))
plot(bm)
bmPred <- preddist(bm,n=10)
plot(bmPred)
mdn <- qmix(bmPred,0.5)
mdn
d <- dmix(bmPred,x=0:10)

n.sim <- 100000
r <-  rmix(bmPred,n.sim)
d
table(r)/n.sim


# Example 3: 3-comp Normal mixture

m3 <- mixnorm( c(0.50,-0.2,0.1),c(0.25,0,0.2), c(0.25,0,0.5), sigma=10)
print(m3)
summary(m3)
plot(m3)
predm3 <- preddist(m3,n=2)
plot(predm3)
print(predm3)
summary(predm3)

RBesT documentation built on May 29, 2024, 10:40 a.m.