RCircos.Track.Outline: Draw Outline for A Data Track

Description Usage Arguments Author(s) Examples

Description

Draw outline with subtracks for one data track. RCircos core components and graphic device must be initialized first. This function is mainly for internal use.

Usage

1
2
RCircos.Track.Outline(inside.pos=NULL, outside.pos=NULL,
    num.layers=1, chrom.list=NULL, track.colors=NULL)

Arguments

inside.pos

Non-negative numeric, inside position (relative to the centre of plot area) of the track.

outside.pos

Non-negative numeric, outside position (relative to the centre of plot area) of the track.

num.layers

Non-negative integer, number of sub-tracks lines. 0 for no sub-track line.

chrom.list

List of chromosome names for which outline will be drawn.

track.colors

Vector of color names for outline of each chromosome.

Author(s)

Henry Zhang

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
## Not run: 
library(RCircos);
data(UCSC.HG19.Human.CytoBandIdeogram);

RCircos.Set.Core.Components(
	cyto.info=UCSC.HG19.Human.CytoBandIdeogram, 
	chr.exclude=c("chrX", "chrY"), 
	tracks.inside=10, tracks.outside=5) 
RCircos.Set.Plot.Area()
RCircos.Chromosome.Ideogram.Plot()

locations <- RCircos.Track.Positions(side="in", track.num=1);  
out.pos <- locations[1];
in.pos  <- locations[2];
subtracks <- 5;
RCircos.Track.Outline(inside.pos=locations[2], 
	outside.pos=locations[1], num.layers=5,
	chrom.list=NULL, track.colors=NULL) 

## End(Not run)


Search within the RCircos package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.