RClone: Partially Clonal Populations Analysis

R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <http://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).

Package details

AuthorSophie Arnaud-Haond [aut], Diane Bailleul [aut, cre], Solenn Stoeckel [ctb]
MaintainerDiane Bailleul <diane.bailleul.pro@gmail.com>
LicenseGPL (>= 2.0)
URL https://github.com/dbailleul/RClone
Package repositoryView on CRAN
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RClone documentation built on May 2, 2019, 4:18 a.m.