infile: Infile GenClone style file

In RClone: Partially Clonal Populations Analysis

Description

A GenClone file of 40 units of Posidonia oceanica (genotypes of seven loci and x/y coordinates) sampled in Mediterranean sea.

Usage

data("infile")

Format

A data frame with 41 observations on the following 12 variables (not relevant).

V1

a numeric vector

V2

a numeric vector

V3

a numeric vector

V4

a numeric vector

V5

a numeric vector

V6

a factor with levels 208208 208210 208216 210212 210216 210218 212216 216218 222226 Po15

V7

a factor with levels 234234 234236 234242 Po5

V8

a factor with levels 159159 159163 159165 163163 163165 165165 Po5-49

V9

a factor with levels 168168 168170 168172 170170 170172 172172 Po5-40

V10

a factor with levels 178178 178180 180180 Po5-10

V11

a factor with levels Po4-3

V12

a factor with levels Po5-39

Details

This data is given as illustration of GenClone file formatted to work with RClone (the R package version of GenClone).

Source

Arnaud-Haond S, Alberto F, Eguiluz VM, Hernandez-Garcia E, Duarte CM, Serrao EA (2014) Disentangling the influence of mutation and migration in clonal seagrasses using the Genetic Distance Spectrum for microsatellites.

Dryad Digital Repository: doi: 10.5061/dryad.3b8k6

References

Arnaud-Haond S, Maolic Y, Hernandez-Garcia E, Eguiluz VM, Alberto F, Serrao EA, Duarte CM (2014) Disentangling the influence of mutation and migration in clonal seagrasses using the Genetic Distance Spectrum for microsatellites. Journal of Heredity 105(4): 532-541. doi: 10.1093/jhered/esu015

Arnaud-Haond S & Belkhir K, 2007, GENCLONE: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization.

Examples

data(infile)
#This is nearly a GenClone file, type:
#write.table(infile, "infile2.csv", col.names = FALSE, row.names = FALSE, sep = ";")
#Now you have a formatted GenClone file.

Example output

RClone documentation built on May 15, 2021, 5:07 p.m.