RClone-package: RClone

In RClone: Partially Clonal Populations Analysis

Description

RClone is a R package gathering all the functions of GenClone program to handle data (haploid and diploid) with clones.

Details

Package:	RClone
Type:	Package
Title:	GenClone
Version:	1.0
Date:	2015-07-31
License:	GPL (>=2.0)
LazyLoad:	yes

This package contains several types of functions:

• import/export functions to handle data from GenClone (see transcript_GC) and Adegenet and export RClone data for Genetix and Arlequin (for example see export_genclone_genetix),

• functions to help defining MLL (MultiLocus Lineage) as psex and genet_dist,

• descriptive functions to compute genotypic richness and diversity: clonal_index, genclone and Pareto_index,

• functions for spatial analyses of clonal structure (see for example autocorrelation).

Author(s)

Creator/Author: Diane Bailleul <[e-mail]>
Author: Sophie Arnaud-Haond <[e-mail]>
Contributor: Solenn Stoeckel

The R implementation of RClone was written by Diane Bailleul.

The design was inspired by GenClone program described in Arnaud-Haond & Belkhir (2007).

References

Review: "Standardizing methods to address clonality in population studies" 2007, Molecular Ecology, S. Arnaud-Haond, C.M. Duarte, F. Alberto and E.A. Serrao

RClone documentation built on May 15, 2021, 5:07 p.m.