Description Usage Arguments Details Value Author(s) References See Also Examples
clonal_index
computes main genotypic diversity and richness indices.
1 | clonal_index(data1, vecpop = NULL, listMLL = NULL)
|
data1 |
a |
vecpop |
vector, option, |
listMLL |
option, a custom list of MLL. |
clonal_index
returns:
the number of units N
,
the number of unique genotypes G
,
the clonal diversity index R
(Dorken & Eckert 2001;
Ellstrand & Roose 1987),
the Shannon-Wiener index estimator H''
(Pielou 1966),
the Pielou evenness index J'
(Pielou 1975),
the Simpson complement unbiased D'
(Pielou 1969 ; Gini 1912 ; Peet 1974),
the Simpson complement index V
(Hurlbert 1971 ; Fager 1972),
the reciprocal of Simpson index unbiased Hill
(Hurlbert 1971 ; Hill 1973).
a table (one population) or a list of tables (several population) with genotypic indices.
Creator/Author: Diane Bailleul <diane.bailleul.pro@gmail.com>
Author: Sophie Arnaud-Haond <sophie.arnaud@ifremer.fr>
Contributor: Solenn Stoeckel
The R implementation of RClone
was written by Diane Bailleul.
The design was inspired by GenClone program described in Arnaud-Haond & Belkhir (2007).
Arnaud-Haond et al., 2007, Standardizing methods to address clonality in population studies.
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