Man pages for REIDS
Random Effects for the Identification of Differential Splicing
| above_below | Above or Below |
| AnnotateGenes | "AnnotateGenes" |
| AnnotateGeneSymbol | "AnnotateGeneSymbol" |
| arcplot | Arc Diagram Plot |
| arc_radius_locs | Arc Radius Locations |
| ASExons | "ASExons" |
| CreateOutput | "CreateOutput" |
| DataProcessing | DataProcessing |
| ExampleFirmaOutput | Example data set for FIRMA |
| ExonTesting | "ExonTesting" |
| ExpressionLevelPlot | "ExpressionLevelPlot" |
| FIRMAScores | "FIRMAScores" |
| GetIntensities | "GetIntensities" |
| graph_info | Graph Information |
| iniREIDS | "iniREIDS" |
| JunInfo | JunInfo |
| min_max_margin | Minimum and Maximum Margin Limits |
| node_coords | Node Coordinates |
| PivotTransformData | "PivotTransformation" |
| REIDS | Random Effects for the Identification of Differential... |
| REIDS_Analysis | REIDS_Analysis |
| REIDSFunction | "REIDSFunction" |
| reidsfunction_genebygene | "reidsfunction_genebygene" |
| REIDSFunction_HPCVersion | "REIDS_HPCVersion" |
| REIDS_IsoformAssesment | REIDS_IsoformAssesment |
| REIDS_JunctionAssesment | REIDS_JunctionAssessment |
| REIDSJunctionAssessment_HPCVersion | REIDSJunctionAssessment_HPCVersion |
| REIDSmodel_intern | "REIDSmodel_intern" |
| REMAP_SplitProbeSets | "REMAP_SplitProbeSets" |
| SpliceIndex | "SpliceIndex" |
| TC12000010 | Example data set |
| TC12000010_ExonLevel | Exon level data |
| TC12000010_GeneLevel | Gene level data |
| TC12000010_positions | Positions |
| TC12000010_REIDS_Output | REIDS Output |
| TC12000010_transcript.clusters | Transcript Clusters |
| TC1500264 | Example data set |
| TranscriptsPlot | "TranscriptsPlot " |
| trim | "trim" |
| xynodes | X or Y coordinates of node locations |
