TranscriptsPlot: "TranscriptsPlot "

In REIDS: Random Effects for the Identification of Differential Splicing

Description

The TranscriptsPlot function plots the known Ensemble transcript isoform composition plots.

Usage

TranscriptsPlot(trans, positions, transcriptinfo, display.probesets = TRUE,
  Data, Groups = list(), Start = NULL, Stop = NULL, Highlight = NULL)

Arguments

trans	The TC ID of the transcript to be plotted.
positions	A table with the start and stop positions of the probe sets.
transcriptinfo	A table with the transcript information of the TC ID.
display.probesets	Logical. Should the probe sets be shown?
Data	The exon level summarized data.
Groups	A list with the groups (columns) of interest in the data.
Start	Specify a specific start point on in the genome.
Stop	Specify a specific stop point on in the genome.
Highlight	A character string specifying a probe set to be highlighted in the transcript composition.

Examples

## Not run: 
data(positions_36)
data(transcript.clusters.NetAffx.36)
data(TC12000010_ExonLevel)
TranscriptsPlot(trans="TC12000010", display.probesets = TRUE,Data=TC12000010_ExonLevel,
Groups=list(c(10:18),c(19:27)),Start=NULL,Stop=NULL,Highlight="PSR12000150")

## End(Not run) 

REIDS documentation built on May 2, 2019, 6:42 a.m.