CreateOutput: "CreateOutput"

In REIDS: Random Effects for the Identification of Differential Splicing

Description

The CreateOutput functions writes the .RData files returned by the REIDS_HPCVersion to .txt files: "Name_INICalls.txt", Name_ExonScores.txt", "Name_ArrayScores.txt" and the summarized values distributed across "Name_WeightedAll.txt", "Name_EqualAll.txt", "Name_WeightedConst.txt" and "Name_EqualConst.txt". The function can also be used for the returned files of REIDSIsoformAssesment_HPCVersion for which it will create the files: "Name_ASInfo.txt" "Name_Compositions.txt","Name_GroupTranscripts.txt" and "Name_NovelConnections". The function is advised to be used with the CreateOutput.R and CreateOutput.pbs file in the documentation folder.

Usage

CreateOutput(ID, Groups, Location = "", Name)

Arguments

ID	A data frame with a "geneID" column.
Groups	A list with elements specifying the columns of the data in each group.
Location	The location where the file should be saved.
Name	A name for the returned list.

Value

.txt files with the information of the REIDSFunction and REIDSJunctionAssesment.

REIDS documentation built on May 2, 2019, 6:42 a.m.