RRNA: Secondary Structure Plotting for RNA
Version 1.0

Functions for creating and manipulating RNA secondary structure plots.

Browse man pages Browse package API and functions Browse package files

AuthorJP Bida
Date of publication2015-07-29 06:21:35
MaintainerJP Bida <bida.john@gmail.com>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RRNA")

Man pages

alignCoord: Alignment of secondary structure folds to 2 nucleotides.
aptPlotCT: RNA secondary structure plotting from CT files
backward: Internal function for moving through secondary structures
bplfile: Creates a bpl file from a coordinate file
circleCoord: Internal function for finding the coordinates of NT's in a...
ct2coord: Generate coordinate file
ct2knet: creates a knet file from a CT file
forward: Internal function for moving through secondary structures
genCords: Internal function that generates coordinates for a given loop...
loadCoords: Loads a coordinate file into a data frame
loadCt: Loads a CT file into an R data frame
loopLength: internal function that determines the length of a loop
makeCt: make a CT file from a structure and sequence
pseudoKnot: removes pseudoknots from a ct file
RNAPlot: Generic RNA Secondary Structure Plotting Function
rotateS: Internal function to rotate a single point
rotateV: internal function to rotate a vector of points
RRNA-package: RNA secondary structure ploting
stemCords: internal function that generates coordinates for a stem
transformFold: Internal function to translate and rotate a secondary...
translate: internal function for translating points

Functions

RNAPlot Man page Source code
RRNA Man page
RRNA-package Man page
alignCoord Man page Source code
aptPlotCT Man page Source code
backward Man page Source code
bplfile Man page Source code
circleCoord Man page Source code
ct2coord Man page Source code
ct2knet Man page Source code
forward Man page Source code
genCords Man page Source code
loadCoords Man page Source code
loadCt Man page Source code
loopLength Man page Source code
makeCt Man page Source code
pseudoKnot Man page Source code
rotateS Man page Source code
rotateV Man page Source code
stemCords Man page Source code
transformFold Man page Source code
translate Man page Source code

Files

inst
inst/CITATION
NAMESPACE
R
R/RRNA.r
MD5
DESCRIPTION
man
man/makeCt.Rd
man/bplfile.Rd
man/forward.Rd
man/circleCoord.Rd
man/ct2coord.Rd
man/loopLength.Rd
man/backward.Rd
man/stemCords.Rd
man/loadCoords.Rd
man/aptPlotCT.Rd
man/loadCt.Rd
man/genCords.Rd
man/RNAPlot.Rd
man/RRNA-package.Rd
man/translate.Rd
man/alignCoord.Rd
man/ct2knet.Rd
man/pseudoKnot.Rd
man/rotateV.Rd
man/rotateS.Rd
man/transformFold.Rd
RRNA documentation built on May 20, 2017, 1:58 a.m.