makeCt: make a CT file from a structure and sequence

In RRNA: Secondary Structure Plotting for RNA

Description

Given an RNA secondary structure in bracket notation containing no pseudoKnots this function creates an R data frame that represents the secondary structures CT file.

Usage

makeCt(struct, seq)

Arguments

struct	Bracket notation. st="(((((....)))))..((..))"
seq	String containing the RNA sequence seq="AUAAUUAAAAAAAACCCCCAAA"

Value

Returns a data frame representing the bracket notaiton secondary structure in a CT file like format.

Author(s)

JP Bida

Examples

st="(((((....)))))..((..))"
seq="AUAAUUAAAAAAAACCCCCAAA"

ct=makeCt(st,seq) 

Example output

RRNA documentation built on May 2, 2019, 1:06 p.m.