Files in RRphylo
Phylogenetic Ridge Regression Methods for Comparative Studies
MD5
README.md
NAMESPACE
DESCRIPTION
R/tree.merger.R
R/auxilliary.functions.R
R/RRphylo-package.R
R/rateHistory.R
R/conv.map.R
R/swapONE.R
R/DataSimians.R
R/RRphylo-deprecated.R
R/node.paths.R
R/overfitSC.R
R/DataApes.R
R/DataCetaceans.R
R/random.evolvability.test.R
R/phyloclust.R
R/plotTrend.R
R/DataFelids.R
R/makeFossil.R
R/rescaleRR.R
R/RRphylo.R
R/namesCompare.R
R/plotShift.R
R/overfitPGLS.R
R/search.shift.R
R/scaleTree.R
R/plotConv.R
R/overfitST.R
R/sizedsubtree.R
R/getSis.R
R/RRphylo-defunct.R
R/print.RRphyloList.R
R/plotRR.R
R/colorbar.R
R/setBM.R
R/swap.phylo.R
R/overfitRR.R
R/getMommy.R
R/move.lineage.R
R/StableTraitsR.R
R/makeL1.R
R/compRates.R
R/overfitSS.R
R/retrieve.angles.R
R/plotRates.R
R/PGLS_fossil.R
R/resampleTree.R
R/rate.map.R
R/treeCompare.R
R/geiger_functions.R
R/DataOrnithodirans.R
R/evo.dir.R
R/angle.matrix.R
R/distNodes.R
R/lollipoPlot.R
R/cutPhylo.R
R/makeL.R
R/getGenus.R
R/fix.poly.R
R/search.trend.R
R/search.conv.R
R/DataUng.R
inst/CITATION
inst/doc/search.shift.html
inst/doc/Plotting-tools.html
inst/doc/search.conv.Rmd
inst/doc/search.trend.html
inst/doc/Alternative-trees.html
inst/doc/Alternative-trees.Rmd
inst/doc/RRphylo.Rmd
inst/doc/Tree-Manipulation.html
inst/doc/Tree-Manipulation.Rmd
inst/doc/search.shift.Rmd
inst/doc/search.conv.html
inst/doc/overfit.Rmd
inst/doc/search.trend.Rmd
inst/doc/Plotting-tools.Rmd
inst/doc/RRphylo.html
inst/doc/overfit.html
inst/figures/RRphylo_logo.png
build/vignette.rds
vignettes/st-data.Rda
vignettes/search.conv.Rmd
vignettes/sc-data.Rda
vignettes/Alternative-trees.Rmd
vignettes/RRphylo.Rmd
vignettes/Tree-Manipulation.Rmd
vignettes/functions4vignettes.R
vignettes/search.shift.Rmd
vignettes/overfit.Rmd
vignettes/search.trend.Rmd
vignettes/Plotting-tools.Rmd
vignettes/figs/plotRR3.png
vignettes/figs/plotShift2.png
vignettes/figs/plotConv2.png
vignettes/figs/plotRates1.png
vignettes/figs/plotConv5.png
vignettes/figs/plotConv3.png
vignettes/figs/plotTrend2.png
vignettes/figs/plotConv1.png
vignettes/figs/plotShift6.png
vignettes/figs/plotRR1.png
vignettes/figs/plotConv4.png
vignettes/figs/plotRR2.png
vignettes/figs/plotShift5.png
vignettes/figs/plotShift3.png
vignettes/figs/plotRates2.png
vignettes/figs/plotTrend4.png
vignettes/figs/plotShift1.png
vignettes/figs/plotTrend3.png
vignettes/figs/plotConv6.png
vignettes/figs/plotTrend1.png
vignettes/figs/plotShift4.png
data/DataApes.rda
data/DataCetaceans.rda
data/DataOrnithodirans.rda
data/DataUng.rda
data/DataFelids.rda
data/DataSimians.rda
man/overfitPGLS.Rd
man/move.lineage.Rd
man/search.conv.Rd
man/conv.map.Rd
man/plotTrend.Rd
man/colorbar.Rd
man/tips.Rd
man/rateHistory.Rd
man/tree.merger.Rd
man/DataApes.Rd
man/overfitRR.Rd
man/getGenus.Rd
man/getSis.Rd
man/overfitSS.Rd
man/evo.dir.Rd
man/fix.poly.Rd
man/DataUng.Rd
man/cutPhylo.Rd
man/makeL.Rd
man/treedataMatch.Rd
man/node.paths.Rd
man/rate.map.Rd
man/search.shift.Rd
man/lollipoPlot.Rd
man/plotRR.Rd
man/plotShift.Rd
man/phyloclust.Rd
man/StableTraitsR.Rd
man/distNodes.Rd
man/retrieve.angles.Rd
man/overfitST.Rd
man/scaleTree.Rd
man/DataCetaceans.Rd
man/makeL1.Rd
man/RRphylo.Rd
man/DataOrnithodirans.Rd
man/RRphylo-deprecated.Rd
man/plotRates.Rd
man/RRphylo-package.Rd
man/treeCompare.Rd
man/DataFelids.Rd
man/PGLS_fossil.Rd
man/namesCompare.Rd
man/resampleTree.Rd
man/compRates.Rd
man/RRphylo-defunct.Rd
man/overfitSC.Rd
man/setBM.Rd
man/DataSimians.Rd
man/angle.matrix.Rd
man/plotConv.Rd
man/sizedsubtree.Rd
man/random.evolvability.test.Rd
man/rescaleRR.Rd
man/swapONE.Rd
man/search.trend.Rd
man/getMommy.Rd
man/sig2BM.Rd
man/makeFossil.Rd
