API for SMITIDstruct
Data Structure and Manipulations Tool for Host and Viral Population
| Global functions | |
|---|---|
| Host | Man page |
| Host-class | Man page |
| SMITIDstruct | Man page |
| SMITIDstruct-package | Man page |
| ViralPop | Man page |
| ViralPop-class | Man page |
| _PACKAGE | Man page |
| addHost | Man page |
| addIndex | Man page |
| addViralObs | Man page |
| addcode | Man page |
| alleleCount | Man page |
| concatViralPop | Man page |
| createAViralPop | Man page |
| createHost | Man page |
| createIndex | Man page |
| demo.SMITIDstruct.run | Man page |
| diversity.pDistance | Man page |
| diversity.sfs | Man page |
| getCov | Man page |
| getDate | Man page |
| getDiversity.pDistance | Man page |
| getDiversity.sfs | Man page |
| getInfosByHostAndTime | Man page |
| getStates | Man page |
| getTimeLine | Man page |
| getTimestamp | Man page |
| getTransmissionTree | Man page |
| is.StringDate | Man page |
| is.juliendate | Man page |
| is.timestamp | Man page |
| isInCode | Man page |
| loadCoords | Man page |
| loadCovs | Man page |
| loadHost | Man page |
| loadStates | Man page |
| loadTree | Man page |
| loadTreeDF | Man page |
| loadViralObs | Man page |
| loadViralPop | Man page |
| loadViralPopSet | Man page |
| mergeCode | Man page |
| plotDiversity.pDistance | Man page |
| plotDiversity.sfs | Man page |
| setStates | Man page |
| simulateStates | Man page |
