loadViralPopSet: loadViralPopSet

In SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population

Description

load a list of viral populations

Usage

loadViralPopSet(lvpop = list(), list)

Arguments

lvpop	a viralPopSet (default new one)
list	a list (see details)

Details

The list have to be on this format: list$HOST_ID$TIME$list$seq_id $seq $prop A list indexed by host ID, follow by a list indexed by time (of observation). The last list contains an array of seq_ID (sequence ID), an array of seq (sequence as characters), and an array of the count of seq. example : $'HOST_42'$'2014-01-01T00:00:00'$seq_ID ["SEQ_1","SEQ_2"] $'HOST_42'$'2014-01-01T00:00:00'$seq ["ACGT","TGCA"] $'HOST_42'$'2014-01-01T00:00:00'$seq_ID ["46","6"]

SMITIDstruct documentation built on June 14, 2019, 5:04 p.m.