loadTree: loadTree

In SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population

Description

load sources and offsprings from file

Usage

loadTree(lhost = list(), file = "tree.txt", source = "ID-source",
  receptor = "ID-receptor", tinf = "Tinf", weight = "Weight")

Arguments

lhost	a HostSet
file	a file containing tree data
source	column name for source ID
receptor	column name for receptor ID
tinf	column name for infection Time
weight	column name of infection weight

Value

the lhost param update with sources and offsprings

Examples

path = system.file("extdata", "data-simul/", package="SMITIDstruct")
lhost <- list()
class(lhost) <- "hostSet"
lhost <- loadTree(lhost,paste(path,"/tree.txt",sep=''))

SMITIDstruct documentation built on June 14, 2019, 5:04 p.m.